PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G017500.1
Common NameB456_009G017500, LOC105771391
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family ERF
Protein Properties Length: 218aa    MW: 24068.1 Da    PI: 7.9965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G017500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.73.2e-192271154
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                        ++++GVr+++ +g+Wv+eIr+p        +r++lg+f taeeAa+a+++a+  + 
  Gorai.009G017500.1 22 KKFRGVRQRH-WGSWVSEIRHP-----LlkRRVWLGTFETAEEAARAYDQAAILMS 71
                        59*******9.**********8.....334*********************98776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.31E-342282No hitNo description
Gene3DG3DSA:3.30.730.103.4E-332382IPR001471AP2/ERF domain
PfamPF008473.3E-122370IPR001471AP2/ERF domain
PROSITE profilePS5103221.9442380IPR001471AP2/ERF domain
SMARTSM003801.0E-392386IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-202382IPR016177DNA-binding domain
PRINTSPR003671.3E-102435IPR001471AP2/ERF domain
PRINTSPR003671.3E-104662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MLIASYMIQI PAFCLQIMVQ SKKFRGVRQR HWGSWVSEIR HPLLKRRVWL GTFETAEEAA  60
RAYDQAAILM SGRNAKTNFP LSQTANGDPE GNESSHSSSP PNELSELLHA KLRKCSKAPS  120
PSMTCLRLDT ENSHIGVWQK RAGKTSDSNW VMTVQFGKGN AQASAKGSNT QGPSASSEVR  180
GEMDEEERIA LQMIEELLHR NCSSSFGVAE EEGNLFV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-172281161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012448291.11e-162PREDICTED: ethylene-responsive transcription factor WIN1-like isoform X1
SwissprotQ9XI332e-77WIN1_ARATH; Ethylene-responsive transcription factor WIN1
TrEMBLA0A0D2TGY01e-162A0A0D2TGY0_G
STRINGPOPTR_0018s13130.11e-100(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83428116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G15360.13e-68ERF family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]